PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0313s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1327aa    MW: 148411 Da    PI: 4.8738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0313s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-0713031325225
                            -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH    2 ktelCrffartGtCkyGdrCkFaH 25  
                            k ++C+f+a+ G+Ck+G++C F H
  Sphfalx0313s0006.1.p 1303 KDVPCKFHAQ-GYCKRGETCVFRH 1325
                            6789**9999.***********77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.4E-10253311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.43E-9254311IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.573257323IPR019787Zinc finger, PHD-finger
CDDcd155685.56E-20259304No hitNo description
SMARTSM002496.4E-8259305IPR001965Zinc finger, PHD-type
PROSITE patternPS013590260320IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.101.4E-21515597IPR003121SWIB/MDM2 domain
SuperFamilySSF475922.4E-18516596IPR003121SWIB/MDM2 domain
SMARTSM001514.9E-4525597IPR019835SWIB domain
PfamPF022013.9E-15534592IPR003121SWIB/MDM2 domain
SMARTSM007191.2E-31654764IPR004343Plus-3 domain
PROSITE profilePS5136023.856654787IPR004343Plus-3 domain
SuperFamilySSF1590424.18E-27655784IPR004343Plus-3 domain
PfamPF031264.2E-19659762IPR004343Plus-3 domain
SuperFamilySSF552771.96E-1610601116IPR003169GYF domain
CDDcd000727.97E-1510641119No hitNo description
PROSITE profilePS5082914.91610641118IPR003169GYF domain
SMARTSM004443.1E-1610651120IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.2E-1710661117IPR003169GYF domain
PfamPF022134.4E-1310671110IPR003169GYF domain
PROSITE profilePS5010314.30513011326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-513011326IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-513031325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1327 aa     Download sequence    Send to blast
MMLAMTTRCF TGKDAMERTE EEGEEKQQQK ARLFGEVLVD KSFSNSSSSN SPPSPPAAPA  60
AGAIVQTLVV AQTANDDGVV VVHENSLDDD KEQKEMVMIQ EGENLKQEPA NDVDESGVQT  120
MHLEENVKAE EEEEQQQQIA EEAEEDVPQQ KAQVAAAAAT IKPEDKTEQE EQDAAAEMLL  180
LPPQASGMEE QQQEGDEGKV VKKEEPYHHQ NDDNNNNNSS RKRALGLVQE RQKKQCRRGG  240
GGGGGGHAVE ERKKDEEDVC YICFDGGDLV MCDRRSCPKA YHLNCIGRDA AFFRKKGAWI  300
CGWHFCSSCT KPGSFQCYMC PIAYCGGCVK EADFCMLRKR KGLCEECLPI VIMIECSQTV  360
NSEGVEVDFE DKETYECLFK EYWLGLKNRL SLTLPKLDKD GKLAKGICED SENGGSDTEN  420
QDPSDVDGLG TESDRESDQD EDDSLDGKNP SRKKIKVAPT LSEFLVVENK ADAFTEGAED  480
KEDEENEDEQ EEEDEEDDDG DDDDDVSEVQ SRKIEGWASK EVLDFIVHMK ADPMKPLTRF  540
AVNHLLWVYI KRHQLQDPEK KSQILCDERL QAMFGKKLMG QSEMYRQLNE HFPPKDSANG  600
AKSLKELDRT VKDDARETDG TEDKLDRDMA KDRRRGRRRS DEKFERPDGN DFAAISPKNI  660
GLIYLRRALL ENLLDDPEFN SKVVDTFVKI RVPGSVSTLD MCYRLVLVTG TRQQTEFYKA  720
GKKLTNVVLE ILNLQRKEDL TIDLASNQDF NEEECQRLRQ SIKCGFIKTL TVGQLEAKAI  780
ALQEVKVNDW FETERQRLVN LRDRASEKGR KKELRECVEK LQELSNPKFR AAKLHARPEV  840
SADPRMGPGY ESDVSDEKPI TDEFSSYRTK VSPGISREKG SAVPSYNRLD SSNVEDSSFG  900
GQKVDGDSHR HKPSSARENN VGGRDWSQKG YEAGRSSDRS FVRDINLMQE KSHRNEERGG  960
GRSWTKDHRV YVQEQLSDQG GAEGLRATGK SHGDHWAGDS TGSKFVKDEF RTPLFDQPKV  1020
YPGGLQRESV GPAAAVLPLS NIGVTPLEPS VMKNQIALDM MEKEKVWHYQ DPTGTVQGPF  1080
SMEQLRKWNT TGLFPVDLRI RRTGETHENS ILLTSALAGK FTQERDPWTT TSTMTGFQSS  1140
TRDPVGGSSV SGLGEVKGST WVGVRGTGDD RRWDTKRGEP DVPTRSTYSG TREWVEDHNA  1200
IEDRGSGWSR VRNSIYGSTP SASGRVDARG PLRSRGDNDS WAPQLLAGGS RGQGLQDSGN  1260
GAGKSNWGRY SGRDSSNTGS WNDDSGSRDR SYLSERSSRL SKKDVPCKFH AQGYCKRGET  1320
CVFRHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A4e-13251325980Histone-lysine N-methyltransferase NSD3
4gnd_C4e-13251325980Histone-lysine N-methyltransferase NSD3
4gne_A4e-13251325980Histone-lysine N-methyltransferase NSD3
4gnf_A4e-13251325980Histone-lysine N-methyltransferase NSD3
4gng_A4e-13251325980Histone-lysine N-methyltransferase NSD3
4gng_D4e-13251325980Histone-lysine N-methyltransferase NSD3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-108DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding